PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017866-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 219aa    MW: 25013.2 Da    PI: 8.21
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017866-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-0595117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k+F++   L  H  +H
  AHYPO_017866-RA  95 YKCETCDKVFRSYQALGGHRASH 117
                      9***********99999998887 PP
2zf-C2H214.30.00012148170123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C ++Fs+   L  H r+H
  AHYPO_017866-RA 148 YECPICLRVFSSGQALGGHKRSH 170
                      99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-1093170No hitNo description
PfamPF139124.8E-1295119IPR007087Zinc finger, C2H2
SMARTSM003550.01295117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7295122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139121.9E-12148170IPR007087Zinc finger, C2H2
SMARTSM003550.059148170IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKSHIMNLPS SSSSSTTFSS SSFYDSDQEK IFDDKTSEIE SFKKNPSGKR SKTKRVILKS  60
YDDQVKEVKS DEDLAICLMM MSRDTRSNSI KKKIYKCETC DKVFRSYQAL GGHRASHKKN  120
RVIGNNLIIE EIKEMGIDYD DENEKKIYEC PICLRVFSSG QALGGHKRSH GVLDYSPRKK  180
IMVINTTNQR LIDLNLPAPL DFDDDQQQIS QIHDHDFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854KRSKTKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191617.18e-42C2H2-like zinc finger protein
SwissprotQ9M2027e-43ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLQ4U3162e-42Q4U316_SILLA; Cys2/His2 zinc-finger transcription factor
STRINGAT3G60580.13e-41(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-44C2H2-like zinc finger protein