PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017909-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LBD

Protein Properties

Length: 205aa MW: 22213.7 Da PI: 7.4083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017909-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.7	1.8e-28	3	103	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C++lr++C++ C+l+ ++ ++q++++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg+++++++++++ AHYPO_017909-RA 3 SCNGCRILRKGCSEACILRACIewiqsGEAQANATLFVAKFFGRADLMSFISAVPNHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICE 96 6*******************9988777889************************************************************ PP DUF260 90 lkaelal 96 ++++++l AHYPO_017909-RA 97 AAVDTVL 103 9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.286	2	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	3	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MMSCNGCRIL RKGCSEACIL RACIEWIQSG EAQANATLFV AKFFGRADLM SFISAVPNHQ 60 RPALFQSLLF EACGRTVNPV NGAVGLLSSG NWHICEAAVD TVLRGGILRP IPPQLLPRAA 120 APPPPVVHSD TLLFHNVYGI PYQLLHQPMR LLNYDVIEEG PHRMRETTPL GSEASAITIN 180 CGENDRDALG GGIGQERKLL NLFI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092590.1	2e-68	LOB domain-containing protein 39
Swissprot	Q9FN11	3e-62	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2P5BZQ4	4e-70	A0A2P5BZQ4_PARAD; Lateral organ boundaries domain containing protein
STRING	XP_010092590.1	7e-68	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-60	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	AHYPO_017909-RA

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]