PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017955-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 377aa MW: 42274.9 Da PI: 7.0647

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017955-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	77	110	3	36
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 +k +rr+++NReAAr+sR+RKka+i++Le AHYPO_017955-RA 77 NDKIQRRLAQNREAARKSRLRKKAYIQQLELSRT 110 6899*************************95444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-6	75	135	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-8	77	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	77	121	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.98E-21	79	131	No hit	No description
SuperFamily	SSF57959	6.19E-8	79	121	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-9	80	121	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.3E-27	163	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNSASAQFVM SRRMNMYEPL HQISSWVDSF RDDAFPNVSP STVVEVNERL DTLSEDTSSH 60 GAQAPLNKYD QEASKPNDKI QRRLAQNREA ARKSRLRKKA YIQQLELSRT KLMQMEQELE 120 RVRQQGTYVG GGVEQLPFSP SVNSGIVAFE MEYGHWIEEQ NKQICELRNA LNVNVSDVEL 180 RILVDSGMKH YFDLFQLKGS AAKADVFYLI SGMWKTSTER FFLWIGGSRP SELLKLDPLT 240 DQQVVDVYNL KQSCEQAEEA LSQGMEKLQQ TLGETIATDH LGEGIYTSEM ANNAIEKLEA 300 LVSFINQAGF IFKPIYILAK RVLIGISFID AKIGRSSSKR DTAANAPDPN YTPSSSRVVS 360 SRRVFPASKG SKLPLG*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNSASAQFVM SRRMNMYEPL HQISSWVDSF RDDAFPNVSP STVVEVNERL DTLSEDTSSH  60
GAQAPLNKYD QEASKPNDKI QRRLAQNREA ARKSRLRKKA YIQQLELSRT KLMQMEQELE  120
RVRQQGTYVG GGVEQLPFSP SVNSGIVAFE MEYGHWIEEQ NKQICELRNA LNVNVSDVEL  180
RILVDSGMKH YFDLFQLKGS AAKADVFYLI SGMWKTSTER FFLWIGGSRP SELLKLDPLT  240
DQQVVDVYNL KQSCEQAEEA LSQGMEKLQQ TLGETIATDH LGEGIYTSEM ANNAIEKLEA  300
LVSFINQAGF IFKPIYILAK RVLIGISFID AKIGRSSSKR DTAANAPDPN YTPSSSRVVS  360
SRRVFPASKG SKLPLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846364.1	0.0	transcription factor TGA4-like isoform X1
Refseq	XP_021846365.1	0.0	transcription factor TGA4-like isoform X1
Swissprot	Q39162	1e-140	TGA4_ARATH; Transcription factor TGA4
TrEMBL	A0A0K9RI73	0.0	A0A0K9RI73_SPIOL; Uncharacterized protein
STRING	XP_010680601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-142	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	AHYPO_017955-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]