PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017963-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 395aa MW: 41457.8 Da PI: 8.2482

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017963-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	82	142	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ lkcprC+stntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+sss AHYPO_017963-RA 82 EAPLKCPRCESTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSSS 142 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	65	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MVFSSVPLYL DPPNWQHHPN SQQILQGSTS SGNHDQNQHL IPPPPQQPHT QMGIGGGPSG 60 GSLTRPNSMA ERARQAKIPP PEAPLKCPRC ESTNTKFCYF NNYSLTQPRH FCKACRRYWT 120 RGGALRNVPV GGGCRRNKRS SSKSSSGGGG GGSSSKSCLT SPSTLLGGDR IPLHMDLVST 180 SGLGPTIPGL PSAGGGTGMS SFMASLQNIA QLGMGNLGLS FGGALSAPPN PLAGLGGLNG 240 GSDGGGLTEN RHHLNNLEFP HLNPNNSNST QVQFPNFLGG FEIPGSSSNH GMFTSSNFQN 300 DHGISNDHDD QEQANDISKS CSSTMLSSQF APIKMENDGQ GLNLHKQFIN NISSTDTNTV 360 TGNQFWNGNT AVSSGTTMWT DLSGLNSSST SHLL*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MVFSSVPLYL DPPNWQHHPN SQQILQGSTS SGNHDQNQHL IPPPPQQPHT QMGIGGGPSG  60
GSLTRPNSMA ERARQAKIPP PEAPLKCPRC ESTNTKFCYF NNYSLTQPRH FCKACRRYWT  120
RGGALRNVPV GGGCRRNKRS SSKSSSGGGG GGSSSKSCLT SPSTLLGGDR IPLHMDLVST  180
SGLGPTIPGL PSAGGGTGMS SFMASLQNIA QLGMGNLGLS FGGALSAPPN PLAGLGGLNG  240
GSDGGGLTEN RHHLNNLEFP HLNPNNSNST QVQFPNFLGG FEIPGSSSNH GMFTSSNFQN  300
DHGISNDHDD QEQANDISKS CSSTMLSSQF APIKMENDGQ GLNLHKQFIN NISSTDTNTV  360
TGNQFWNGNT AVSSGTTMWT DLSGLNSSST SHLL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685788.1	1e-145	PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBL	A0A0K9QXD0	1e-125	A0A0K9QXD0_SPIOL; Uncharacterized protein
STRING	XP_010685788.1	1e-144	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-40	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	AHYPO_017963-RA