PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018036-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 359aa    MW: 39285.3 Da    PI: 6.7279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018036-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.4e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  AHYPO_018036-RA 15 KGPWTPEEDKKLVDYIQLHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding51.22.9e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  AHYPO_018036-RA  68 RGKFSDDEQQTIINLHSVLGNK-WSSIATHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-25665IPR009057Homeodomain-like
PROSITE profilePS5129417.8061062IPR017930Myb domain
SuperFamilySSF466891.17E-3012109IPR009057Homeodomain-like
SMARTSM007171.8E-151464IPR001005SANT/Myb domain
PfamPF002497.8E-181562IPR001005SANT/Myb domain
CDDcd001672.20E-121762No hitNo description
PROSITE profilePS5129426.52963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2666117IPR009057Homeodomain-like
SMARTSM007173.7E-1567115IPR001005SANT/Myb domain
PfamPF002495.5E-1568113IPR001005SANT/Myb domain
CDDcd001673.08E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMGRSPCSDE NGLKKGPWTP EEDKKLVDYI QLHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSDDEQQTII NLHSVLGNKW SSIATHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNLLANLP QLLVAANLSN SLMMNSTSTI NGIPSTFEDT LRLIDSDPTQ  180
LAKIHILHNM LQVLGQTSSN DTPCVSSQIT NLLCNSTLPF QNRLNHNNDL INGAISQFPG  240
SLVSSSFETP DVLQLFGSKN GCQSSSNDKE IGGEFLTADS LMPGLVPASP DHCSSKPINQ  300
KVDCTIMSTN PSSATTPTAD PFEIAAGNWS SDLIDVAAHS YWTDIIDQAS SPSWPISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021752592.10.0transcription factor MYB39-like
SwissprotQ9S9Z22e-88MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0K9RLU61e-171A0A0K9RLU6_SPIOL; Uncharacterized protein
STRINGXP_010671094.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-90myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]