PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018082-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22664.7 Da    PI: 5.7234
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018082-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+i+n++ rqvtfskRr g++KKAeELS+LCda+va+iifs tgkl+eys+
  AHYPO_018082-RA  9 KKIDNTTARQVTFSKRRRGLFKKAEELSILCDADVALIIFSATGKLFEYSN 59
                     68***********************************************95 PP
2K-box47.48e-17941612188
            K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                      ++ L++ei n  +++Rh+ Ge+L+ Ls++eLq+Le+ Le +lk+i +kK e ++++i+ l++k  e++
  AHYPO_018082-RA  94 YTMLNEEIANKSQQLRHMRGEELQGLSIEELQELEKSLEFGLKQIMDKKGEKITNEINSLKQKVLEVS 161
                      678999999999***************************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.478161IPR002100Transcription factor, MADS-box
CDDcd002651.09E-37277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-29375IPR002100Transcription factor, MADS-box
PfamPF003197.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.16387183IPR002487Transcription factor, K-box
PfamPF014861.1E-1393161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAREKIKIKK IDNTTARQVT FSKRRRGLFK KAEELSILCD ADVALIIFSA TGKLFEYSNI  60
SMNTILERHK LHSKNLEKLE QPSLRLQLVE NGNYTMLNEE IANKSQQLRH MRGEELQGLS  120
IEELQELEKS LEFGLKQIMD KKGEKITNEI NSLKQKVLEV SKGIQQSADS ENLCYEDGQS  180
SESVDWHGLA DEETIGDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19169169MEF2C
5f28_B6e-19169169MEF2C
5f28_C6e-19169169MEF2C
5f28_D6e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680338.11e-105PREDICTED: MADS-box protein JOINTLESS
SwissprotQ9FUY62e-79JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2C9UY034e-87A0A2C9UY03_MANES; Uncharacterized protein
STRINGXP_010680338.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-78MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]