PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018100-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 346aa MW: 37763.2 Da PI: 10.3571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018100-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.1	2.4e-06	313	344	6	39
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-ST CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKls 39 +++Er RR ri ++ +L++l+P+ + +++ ++ AHYPO_018100-RA 313 SIAERERRTRISGKLKKLQDLVPNmD---KDPTNT 344 689*********************77...555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.093	307	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-5	310	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.18E-4	311	345	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-5	312	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MYSSSSSSQQ QSSSNTQTNP NLMRYDSAPS SLFSHTVDSV IERGHHHQFF SEFTQSRLSS 60 SGGESSRNTL SLMHQQPYNE TDSSSKTTSS NLIRHSSSPA GFLTHLASDI GYEANYNEQG 120 TSNMMSRLGP QLSFTRKDHH SLSQISEVNE NNDHKRSANN SQHPTTSGFS LSTWDESNDN 180 NFFISNSSNK RGKAINDDIL NERNEIHGLG GLRSVGGGWS LSHGGGDGKV SVEGGGSGID 240 GRRGRGFKQH NGGARLLLVS GRYLLGENRP TDGSLVVSAA KRRRFNVGQP TVPQDSVPCK 300 IRAKRGFATH PRSIAERERR TRISGKLKKL QDLVPNMDKD PTNTK*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MYSSSSSSQQ QSSSNTQTNP NLMRYDSAPS SLFSHTVDSV IERGHHHQFF SEFTQSRLSS  60
SGGESSRNTL SLMHQQPYNE TDSSSKTTSS NLIRHSSSPA GFLTHLASDI GYEANYNEQG  120
TSNMMSRLGP QLSFTRKDHH SLSQISEVNE NNDHKRSANN SQHPTTSGFS LSTWDESNDN  180
NFFISNSSNK RGKAINDDIL NERNEIHGLG GLRSVGGGWS LSHGGGDGKV SVEGGGSGID  240
GRRGRGFKQH NGGARLLLVS GRYLLGENRP TDGSLVVSAA KRRRFNVGQP TVPQDSVPCK  300
IRAKRGFATH PRSIAERERR TRISGKLKKL QDLVPNMDKD PTNTK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010666766.1	6e-96	PREDICTED: transcription factor bHLH128
TrEMBL	A0A0J8B3U2	1e-94	A0A0J8B3U2_BETVU; Uncharacterized protein
STRING	XP_010666766.1	2e-95	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	4e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_018100-RA