PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018149-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 496aa    MW: 55264.6 Da    PI: 7.9347
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018149-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.3e-24177230155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kp+l+Wt+ LH+ F+eav+ + G ekA+Pk+ilelm+v+gL +e+v+SHLQkYR+
  AHYPO_018149-RA 177 KPKLVWTTSLHNIFLEAVHTI-GLEKAVPKKILELMNVPGLRRENVASHLQKYRI 230
                      79*******************.********************************6 PP
2Response_reg523.9e-1838724107
                      EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
     Response_reg  24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                       +v +++++ +al +l+ k+  +Dlil+D+ mp+m+Gl+llk+ ++   k+p+++++a +++  +l+ l++Ga  +l Kp +  +l
  AHYPO_018149-RA   3 HHVVAMKNPLDALYTLRMKKqsFDLILTDVHMPEMSGLDLLKHVERDF-KIPVVLMSADQDKGIMLNGLELGAVFYLIKPLSAYDL 87 
                      5788899999999999555555**********************9988.9******************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011027.49195IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0086191IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.76E-17195No hitNo description
Gene3DG3DSA:3.40.50.23001.0E-223105No hitNo description
PfamPF000726.0E-15387IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.57E-213103IPR011006CheY-like superfamily
SuperFamilySSF466893.05E-17174234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-25175234IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22177230IPR006447Myb domain, plants
PfamPF002494.4E-6180229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MYHHVVAMKN PLDALYTLRM KKQSFDLILT DVHMPEMSGL DLLKHVERDF KIPVVLMSAD  60
QDKGIMLNGL ELGAVFYLIK PLSAYDLSRL WQYAITTKES TNKTNNEVLP SFGMSPMITS  120
EMLMHFQNPN NGYMINNEFE PSSSDVQLKK NRAKNNKGKK LKRVNGGGIR KKSCPKKPKL  180
VWTTSLHNIF LEAVHTIGLE KAVPKKILEL MNVPGLRREN VASHLQKYRI FLKKIAEATG  240
SMQYGIPSKL NGGTFFEKGE SSSSQGLNSF GDHIKPNDHM QLYPNQGSQI PNQNVPILDQ  300
LPSFKGIDQQ GLFSKGSLSF DKGQSSQDVR SSSNPRSIGN LQPITNNYVG LRISTNGELI  360
SPFIKNSSII NGNGIGNNPA KDIYGTNHIE KTYEMNFGHN NNSLQISNAT LIDQFLGLDD  420
ANVDMPNFDH NASQQENSFG MSQNMSSMQG ITDELRQLWV DLHLDKESHG NDLGFGDAQS  480
NAEYNLFDGL DQASY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20176236464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107911.11e-143PREDICTED: two-component response regulator ARR1-like
STRINGXP_010693571.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-43response regulator 2