PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018191-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 215aa    MW: 24195.7 Da    PI: 9.5562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018191-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.7e-13646155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr++  +g+       +      kr++lg+f taeeAa+a+++a+  ++g
  AHYPO_018191-RA  6 KKFRGVRQRQ-WGS-------W------KRVWLGTFETAEEAARAYDQAAILMNG 46
                     59*****999.***.......7......8*********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.81E-26654No hitNo description
SMARTSM003803.2E-24760IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14755IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-19755IPR001471AP2/ERF domain
PROSITE profilePS5103216.739754IPR001471AP2/ERF domain
PfamPF008476.0E-7746IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVLPSKKFRG VRQRQWGSWK RVWLGTFETA EEAARAYDQA AILMNGQNAK TNFPRDKLNP  60
STTNTNNSNV EDHTLSNILS AKLKKYCKDP SPSLTCLRLD SDHSHIGVWQ KRAGNSSTST  120
WVMRLELGKT SNMSKQKFNN NNNNNNNNNN NNNNNNNNLL VNHNNQGSQL PNDSSNSSLV  180
MEKEGSNEIN EEDKATLQMI EELLNWNPPS TSFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-157561474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696316.12e-86PREDICTED: ethylene-responsive transcription factor WIN1
TrEMBLA0A0K9Q9V02e-78A0A0K9Q9V0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010696316.17e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.14e-46ERF family protein