PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018257-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YB

Protein Properties

Length: 132aa MW: 14877.9 Da PI: 5.9665

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018257-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	106.8	1.4e-33	1	78	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mk++l nakisk aket+qecvsefisfvt+ea+dk e+rkt+ngdd++wal tlGf++y e+++ yl+kyr+ e ek AHYPO_018257-RA 1 MKQILAPNAKISKGAKETIQECVSEFISFVTEEATDK---ENRKTLNGDDICWALITLGFDNYGEAITRYLQKYRKYELEK 78 8*******************************996...9********************************999775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.2E-14	1	52	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.9E-31	1	101	IPR009072	Histone-fold
SuperFamily	SSF47113	3.46E-24	1	101	IPR009072	Histone-fold
PRINTS	PR00615	7.3E-12	19	37	No hit	No description
PRINTS	PR00615	7.3E-12	54	72	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MKQILAPNAK ISKGAKETIQ ECVSEFISFV TEEATDKENR KTLNGDDICW ALITLGFDNY 60 GEAITRYLQK YRKYELEKPT NCHGISTKEI IASGSEEKDQ NKLMDQTYST FPSLEFKIID 120 PKGKSPFKNP S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-25	1	72	17	91	Transcription factor HapC (Eurofung)
4g92_B	9e-25	1	72	17	91	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021742526.1	2e-48	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	1e-32	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A3S9LK64	1e-38	A0A3S9LK64_POPTO; Nuclear factor Y, subunit B4
TrEMBL	B9I7Q3	1e-38	B9I7Q3_POPTR; Uncharacterized protein
STRING	XP_010674711.1	2e-42	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-35	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	AHYPO_018257-RA

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]