PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018261-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 987aa MW: 109422 Da PI: 8.742

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018261-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	42	77	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G + Wk++a + R+ +++ AHYPO_018261-RA 42 QWSEHEIERFYEAYRKHGQD-WKKVAVSVR-SRSIEMV 77 6***************99.*****99.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.5E-8	38	84	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-7	42	77	IPR001005	SANT/Myb domain
CDD	cd00167	4.81E-5	43	77	No hit	No description
Pfam	PF06584	4.5E-26	525	624	IPR033471	DIRP domain
SMART	SM01135	1.6E-34	525	625	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MAPSKKSKSV NGGFASASDS SPSKDDKSKQ KKRKLSNLLG PQWSEHEIER FYEAYRKHGQ 60 DWKKVAVSVR SRSIEMVEAL YSMSRAYLSL PEGTASVHGF KAMMIDHYNA LEGSDSEKAT 120 KEPEVIARKF KKIPKTKVLI DSSRDDAKHK PAGSSHGCLA LLKNKGDDSF PHIPVKKRTP 180 RVLVSLFSNK KFEVAGTNAI EDGSQTTYQK IGHMRTLQVS DKEELISPFL AAKGKNGVYA 240 APEESKEDRL ARNVAKIGNL ARNSMHPGTS ALAAEYKNGE KRKKEEVQQS EALFFDNIQK 300 TYDHSNRGTK RNNYDDELAA CDALQTLAEI SAMMPYIAKE SVKDAEESMI GWNTTVNPVA 360 RSNVTLSNEK MKGESNKKHN QASNVNQKAE SLINCSRKSS KNETAVNEEV KSADSSGKVS 420 GISIRCKSSD RSPHLSLSND SHSGDIEAAV SSTQMDTAGY IIIPTKKSRR KRDRTSHFKN 480 TYNAPNGCSG TGLPVLQNKL QDGEGMLLHC LSWPEARRWC VYEWFYSAID YPWFAKRDFM 540 EYLNHAGLGH IPRLTRAELG IIRGSLGKPR RFSKCFLQQQ RERLNYYRES VRDHYVNFRA 600 GLGEVPTDLL YPLRVGQQVV AIHPKTRDCH NGKVLSVQRD NCLVQFHCPD LGVEVVLDID 660 CMPLNLLENM PEAMRRERMQ FDHRHIQVSK ANGSIVSAPM EHMINVDPHL SVPPRSLTTA 720 NDIKVKPSFS NSLTKVAANG SIKTQSATQN QSCSFVQIHS QEGYMRNVPE FKEGLDRKVY 780 EQLNGCSENL PLNSVGLNGK MHSSHNSSLC CQEIASNVAG IVEDSRKKAL KLVDTAIKEI 840 TSKKEGDDKF RRISEALDRN GKAECASNCG TSMTMSSNEI QGSLPHQNPT ISCSSDPQLA 900 CDMISSQSAG DSDLEVPSDL ITSCVATVLM IQTCTERQHP PAEVAQILDN AATSLHPCCP 960 QNLSIYRDIQ MCMGIIKTQI LALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MAPSKKSKSV NGGFASASDS SPSKDDKSKQ KKRKLSNLLG PQWSEHEIER FYEAYRKHGQ  60
DWKKVAVSVR SRSIEMVEAL YSMSRAYLSL PEGTASVHGF KAMMIDHYNA LEGSDSEKAT  120
KEPEVIARKF KKIPKTKVLI DSSRDDAKHK PAGSSHGCLA LLKNKGDDSF PHIPVKKRTP  180
RVLVSLFSNK KFEVAGTNAI EDGSQTTYQK IGHMRTLQVS DKEELISPFL AAKGKNGVYA  240
APEESKEDRL ARNVAKIGNL ARNSMHPGTS ALAAEYKNGE KRKKEEVQQS EALFFDNIQK  300
TYDHSNRGTK RNNYDDELAA CDALQTLAEI SAMMPYIAKE SVKDAEESMI GWNTTVNPVA  360
RSNVTLSNEK MKGESNKKHN QASNVNQKAE SLINCSRKSS KNETAVNEEV KSADSSGKVS  420
GISIRCKSSD RSPHLSLSND SHSGDIEAAV SSTQMDTAGY IIIPTKKSRR KRDRTSHFKN  480
TYNAPNGCSG TGLPVLQNKL QDGEGMLLHC LSWPEARRWC VYEWFYSAID YPWFAKRDFM  540
EYLNHAGLGH IPRLTRAELG IIRGSLGKPR RFSKCFLQQQ RERLNYYRES VRDHYVNFRA  600
GLGEVPTDLL YPLRVGQQVV AIHPKTRDCH NGKVLSVQRD NCLVQFHCPD LGVEVVLDID  660
CMPLNLLENM PEAMRRERMQ FDHRHIQVSK ANGSIVSAPM EHMINVDPHL SVPPRSLTTA  720
NDIKVKPSFS NSLTKVAANG SIKTQSATQN QSCSFVQIHS QEGYMRNVPE FKEGLDRKVY  780
EQLNGCSENL PLNSVGLNGK MHSSHNSSLC CQEIASNVAG IVEDSRKKAL KLVDTAIKEI  840
TSKKEGDDKF RRISEALDRN GKAECASNCG TSMTMSSNEI QGSLPHQNPT ISCSSDPQLA  900
CDMISSQSAG DSDLEVPSDL ITSCVATVLM IQTCTERQHP PAEVAQILDN AATSLHPCCP  960
QNLSIYRDIQ MCMGIIKTQI LALVPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021772928.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A0K9RR56	0.0	A0A0K9RR56_SPIOL; Uncharacterized protein
STRING	XP_010674727.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-108	DNA binding

Link Out ? help Back to Top
Phytozome	AHYPO_018261-RA