PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018354-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 658aa    MW: 74146.5 Da    PI: 7.4411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018354-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11604652147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +WT++E++ l d+vk++G   Wk I ++       Rt  ++k++w++ 
  AHYPO_018354-RA 604 RRKWTPQEEDTLRDGVKRFGRS-WKYILECYReifGDRTYVDLKDKWRNM 652
                      679*****************55.*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.401599657IPR017930Myb domain
SuperFamilySSF466891.0E-12601654IPR009057Homeodomain-like
SMARTSM007171.7E-6603655IPR001005SANT/Myb domain
PfamPF002492.4E-8604652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11604654IPR009057Homeodomain-like
CDDcd116604.53E-16605654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MDEKVAKWII EFLLRKTFID EKIINGVLLC LPISNNDSRL KKTILLRKIE SEISNGSVSE  60
NLLELFEIIE ELDHREGTRA SDSMKKAYCA VAVDCTLRFL EENAKDNRSY VLAVERVWRN  120
RVRLMEALVS EESKCWLEDI EAAIWDSEVC EKILMRNTRN EALKAVRGFL KEAWNSMGPA  180
FLELVAAKVG DEVEALRHGF GSVNHCRKVM ASQGVQKGQS LVRRKDVAVK TKHLRGAKIS  240
DAGEDEVDSI NTANDVPIDE IEKVPETPQS NSLQLQADAG GFHPDTSQVA QNLSFTKEND  300
VPTHNIDSVL APQLNSNVRA CHSDVCQDTH NMSHAKDNEL LPRTIEKLQA HQSSSMLSDS  360
HPDGSRAACT KFVTKVTDNA NGVKAAENRT DPVIQSPKVT RFQKALKTSV MELHEAPTEP  420
LQETIQVAET LCSTGVTHNH KTAVQNQTRV EKYAFTGVNR VQRALETSSV EVHAAGKNPG  480
ANASRTVENV SPKVATNNVK IDAVLVNQTQ PGTDAPRESP KNNPKNVDKD QTLEKIEGSD  540
THYPRELPKR KRSLMEPNST SHTMEWDDIE SRDLHAHSPS ISKRSRSSAL KLYDSRNFAI  600
RRMRRKWTPQ EEDTLRDGVK RFGRSWKYIL ECYREIFGDR TYVDLKDKWR NMTRYES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1595604RNFAIRRMRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734347.10.0uncharacterized protein LOC110701068
TrEMBLA0A0K9QSX41e-174A0A0K9QSX4_SPIOL; Uncharacterized protein
STRINGXP_010673889.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.15e-19TRF-like 5