PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018402-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 256aa    MW: 28524.7 Da    PI: 8.9541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018402-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-055577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ Cgk+Fs+   L  H  +H
  AHYPO_018402-RA 55 YECKTCGKTFSSFQALGGHRASH 77
                     99**********99999998887 PP
2zf-C2H212.20.00055173195123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg  Fs+   L  H+r+H
  AHYPO_018402-RA 173 HECTLCGAEFSSGQALGGHMRRH 195
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-65382No hitNo description
PfamPF139126.4E-135479IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-45577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0255577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.785582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-6170199No hitNo description
Gene3DG3DSA:3.30.160.607.7E-4171197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12172197IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.157173200IPR007087Zinc finger, C2H2
SMARTSM003550.02173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDCQDEVINY TNSMQQSVVK GKSRELRAPI LRDFSTKFKS RKYIEEGGKS GYYVYECKTC  60
GKTFSSFQAL GGHRASHKKP KNTKHEDYNN NHDNKINILI SSGKTSRSNY SKYSSLILSS  120
DDEEPPFKLE SKNNNNNNNN NIICSSTSLS LQLTNRALYS GVTNHQNNKG RVHECTLCGA  180
EFSSGQALGG HMRRHRGSNT TVASSIATLP EMSKDMIKIP QSTNTSVLSF DLDLNLPALP  240
EDNVRVDHQK ESEFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684077.18e-67PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0K9Q9V41e-64A0A0K9Q9V4_SPIOL; Uncharacterized protein
STRINGXP_010684077.13e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-39C2H2 family protein