PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018416-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MIKC_MADS

Protein Properties

Length: 139aa MW: 15974.4 Da PI: 9.9412

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018416-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87	1.1e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvt+skR+ngi+KKA E+SvLCda+v+v+ifs++g ++ y AHYPO_018416-RA 9 KRIENTTNRQVTYSKRKNGIIKKATEISVLCDAKVSVVIFSNNGIMHMYH 58 79********************************************9996 PP
2	K-box	66.8	7.6e-23	71	139	1	69
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 yq+ sgk+ ++ak+e+l+ e++++kke++ ++ e+Rhl+Ged+ sL + +L++Le++Le++l ++R+kK AHYPO_018416-RA 71 YQTISGKRIWDAKHENLKIEIDRIKKENDDMRIELRHLKGEDVASLPHTDLMRLEDALETGLVTVRNKK 139 89999***************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.039	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.22E-34	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.96E-36	2	80	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-22	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-13	82	139	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	11.044	84	139	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT YSKRKNGIIK KATEISVLCD AKVSVVIFSN NGIMHMYHTS 60 SSSVPDILEQ YQTISGKRIW DAKHENLKIE IDRIKKENDD MRIELRHLKG EDVASLPHTD 120 LMRLEDALET GLVTVRNKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6byy_A	2e-15	1	75	1	73	MEF2 CHIMERA
6byy_B	2e-15	1	75	1	73	MEF2 CHIMERA
6byy_C	2e-15	1	75	1	73	MEF2 CHIMERA
6byy_D	2e-15	1	75	1	73	MEF2 CHIMERA
6bz1_A	2e-15	1	75	1	73	MEF2 CHIMERA
6bz1_B	2e-15	1	75	1	73	MEF2 CHIMERA
6bz1_C	2e-15	1	75	1	73	MEF2 CHIMERA
6bz1_D	2e-15	1	75	1	73	MEF2 CHIMERA
6c9l_A	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	1	75	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00080	ChIP-seq	Transfer from AT5G20240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677653.1	1e-72	PREDICTED: floral homeotic protein PMADS 2 isoform X1
Refseq	XP_019107021.1	1e-72	PREDICTED: floral homeotic protein PMADS 2 isoform X2
Swissprot	Q0HA25	3e-67	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	Q41353	6e-74	Q41353_SILLA; SLM2 protein
STRING	XP_010677653.1	4e-72	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-59	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_018416-RA

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]