PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018419-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

WRKY

Protein Properties

Length: 161aa MW: 18507.4 Da PI: 7.1401

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018419-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.2	6.9e-28	12	70	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D++nWrKYG K++kgs++prsYYrC+++ gC+++k+ve s ++p + itY +eH+h+ AHYPO_018419-RA 12 SDKWNWRKYGEKVIKGSPYPRSYYRCSYSgGCSARKQVEESYNEPGLYLITYMEEHTHP 70 7**************************9**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-28	3	72	IPR003657	WRKY domain
PROSITE profile	PS50811	28.07	6	72	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-26	9	72	IPR003657	WRKY domain
SMART	SM00774	5.2E-30	11	71	IPR003657	WRKY domain
Pfam	PF03106	4.4E-24	13	70	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MVQQAGGDRI LSDKWNWRKY GEKVIKGSPY PRSYYRCSYS GGCSARKQVE ESYNEPGLYL 60 ITYMEEHTHP YPTRRHSQAG RSVKRPNNHS LYSTKLATTI HNESPNMTFI NNTMTTSLSE 120 SSTKNNNNHS DDQVFVFMVF EDDFFAGLDY LESLSVNMYD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-18	13	73	18	80	Disease resistance protein RRS1
5w3x_D	9e-18	13	73	18	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676412.1	2e-62	PREDICTED: WRKY transcription factor 22
TrEMBL	A0A0K9S161	1e-60	A0A0K9S161_SPIOL; Uncharacterized protein
STRING	XP_010676412.1	6e-62	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-17	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	AHYPO_018419-RA