PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018430-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 512aa    MW: 56883.6 Da    PI: 6.5128
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018430-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504e-16741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  AHYPO_018430-RA  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11545No hitNo description
CDDcd002021.29E-16651No hitNo description
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.6E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RIDPDDYEDH  60
KLARVKTISL KKDDDKLSKR KMNFENMIDG GFNTDHRQGF TKNIDEDTSN RSSSGSAISN  120
SDSCAQFGSA DASELTGPAQ SIVWDALVPS RKRTCVVRTK QSPVEKLTRD LRTILREQAS  180
HLSVSSEELL YENEAPMVSV EIGHGSVLIR HPSSIAREEE SEASSLSVDN KFCRTDEGYS  240
NPVSMLKIND SKSVINAFFG VEKAKKLNGH LIQLPQEIVN ADIFCGHFTD EEQQDLLKYL  300
PTIDTSTVSD SLGSMFTSMH FKENLSSFQQ LLADGVFDSY FSGVQAEECE VFKRLALTNM  360
AKCKWVEYYN MLKEKKTKES SGESIRIPEA KSGFSGNLFN AKRSQDSQNH LWPETKSVMR  420
NPKSKQLSQN EGSRLTQAPR SLFTLPKNGS SLKLESYQFE DESSDQDLLL NVPSNGSFPQ  480
AEAELFCPAS SFVSQQASVS SSSIYLSHLR P*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765789.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-120GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0K9R9670.0A0A0K9R967_SPIOL; Uncharacterized protein
STRINGXP_010677131.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-114GATA transcription factor 26