PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018442-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 221aa    MW: 23556.7 Da    PI: 7.8193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018442-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk Fs+   L  H  +H
  AHYPO_018442-RA 55 FSCKTCGKKFSSFQALGGHRASH 77
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.57E-1053123No hitNo description
Gene3DG3DSA:3.30.160.605.1E-45382IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.4E-105579IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.1755582IPR007087Zinc finger, C2H2
SMARTSM003550.0965577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139121.6E-10100125IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307101128IPR007087Zinc finger, C2H2
SMARTSM003550.38101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNTQTATIAK FPAIRGAAGE IETFAMANCL MLLSSQQNSA INSTAMADNE VGRMFSCKTC  60
GKKFSSFQAL GGHRASHKKI KPANSGEVSG ELNIPTKPKV HACSICGAEF PIGQALGGHM  120
RRHRGLLSGG DGGSAVVSDV TSDGSFQNSE GSHIVDNKKR KSNDVVVEVP ILKKATSCKR  180
VCLDLSLSLW NKEEEHGDHS EVEKGIIVDQ DEEDFLKLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720925.13e-74zinc finger protein ZAT8-like
TrEMBLA0A0K9QZC03e-53A0A0K9QZC0_SPIOL; Uncharacterized protein
STRINGXP_010685828.15e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-29C2H2 family protein