PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018502-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18134 Da    PI: 10.5606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018502-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-201764249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i++ s  qvtfskRr gi+KKA+E+++LC++++ +i+fs+ ++++ +
  AHYPO_018502-RA 17 KIKDPSHLQVTFSKRRLGIFKKASEICTLCGVQAIIIVFSPGNRIFSF 64
                     68999999*********************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-27867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.838868IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-26985IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-151030IPR002100Transcription factor, MADS-box
PfamPF003196.1E-211764IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-153045IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-154566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MATKKPSRGR QKIKIAKIKD PSHLQVTFSK RRLGIFKKAS EICTLCGVQA IIIVFSPGNR  60
IFSFGHPNVE SIVDRYLNHN PLSCPPQTSS SNNAKNKNVD VGENSALNTL NSQITKTLDL  120
LSIEKNKGEV LKNLLRKSSQ WWWEAPIDNL GLHELEFVIV GK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735544.12e-67agamous-like MADS-box protein AGL62
TrEMBLA0A0K9QCA55e-63A0A0K9QCA5_SPIOL; Uncharacterized protein
STRINGXP_010692431.13e-65(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-47AGAMOUS-like 62