PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018504-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21809.8 Da    PI: 9.6944
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018504-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.6e-201764249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +i++   rqvtfskRr g++KKA+E+++LC++++ +i+fs+ ++++ +
  AHYPO_018504-RA 17 KINDPNHRQVTFSKRRLGVFKKASEICTLCGVQAIIIVFSPGNRIFSF 64
                     6888999**********************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-28867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1868IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-26982IPR002100Transcription factor, MADS-box
CDDcd002656.69E-31977No hitNo description
PRINTSPR004043.7E-161030IPR002100Transcription factor, MADS-box
PfamPF003193.7E-211764IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MATKKPPRGR QKIEIAKIND PNHRQVTFSK RRLGVFKKAS EICTLCGVQA IIIVFSPGNR  60
IFSFGHPNVK SIIDRYLCRN PSSCPPQTSS SNNDNNKNVD VGQNTTLNTL NLQITNTLDL  120
LANEKNKGEA FKNLLRESSQ WWWEAPIDNL GLHELEVLGV SLEELKKSIT SQVIFLENQR  180
SNMANNAADH EARV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A3e-16994182Myocyte-specific enhancer factor 2B
1n6j_B3e-16994182Myocyte-specific enhancer factor 2B
1tqe_P2e-16994283Myocyte-specific enhancer factor 2B
1tqe_Q2e-16994283Myocyte-specific enhancer factor 2B
1tqe_R2e-16994283Myocyte-specific enhancer factor 2B
1tqe_S2e-16994283Myocyte-specific enhancer factor 2B
6c9l_A2e-16994283Myocyte-specific enhancer factor 2B
6c9l_B2e-16994283Myocyte-specific enhancer factor 2B
6c9l_C2e-16994283Myocyte-specific enhancer factor 2B
6c9l_D2e-16994283Myocyte-specific enhancer factor 2B
6c9l_E2e-16994283Myocyte-specific enhancer factor 2B
6c9l_F2e-16994283Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754978.12e-73agamous-like MADS-box protein AGL62
TrEMBLA0A0K9QCA52e-68A0A0K9QCA5_SPIOL; Uncharacterized protein
STRINGXP_010692431.12e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-33AGAMOUS-like 61