PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018505-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19168.4 Da    PI: 6.7802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018505-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.4e-22350249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ +
  AHYPO_018505-RA  3 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGMEAIIIVFSPGQKIFSF 50
                     8******************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-21153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.423154IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-23167IPR002100Transcription factor, MADS-box
PfamPF003191.6E-22350IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARIKNPSHR QVTFSKRRLG LFKKASEICT LCGMEAIIIV FSPGQKIFSF GHPSVESIVN  60
RYLSRNPSYP PQTSSSNAKK EDGDGDGDGD GDGDGVEQLQ SSTMNQLNSQ LTKILDLLEA  120
EKNRGENLNN LRRRSEPGFE SDSRSRSSQC QWWWEAPIDT LKLHELEILA V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735544.16e-66agamous-like MADS-box protein AGL62
TrEMBLA0A0K9QCA57e-62A0A0K9QCA5_SPIOL; Uncharacterized protein
STRINGXP_010692431.13e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-35AGAMOUS-like 62