PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018515-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 313aa    MW: 32965.3 Da    PI: 6.6874
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018515-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.9e-11262291130
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeiee 30 
                      e+elkr++rkq+NRe+ArrsR+RK++e+ +
  AHYPO_018515-RA 262 ERELKRQKRKQSNRESARRSRLRKQEELTQ 291
                      89************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.8E-29194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.3E-6116233No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-10256291No hitNo description
PfamPF001708.1E-11262291IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-5265292No hitNo description
CDDcd147028.95E-13267289No hitNo description
PROSITE patternPS000360269284IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGAAEEQTPS KPSKATSSAQ DAPPTMPPYP DWSSSMQAYY SNGATPPFFT SPVAAPAPHP  60
YMWGGQHPMM PPYGTPVHYP ALYPPGGVYT HPNLATMPIT AGAPETDGKN SDVKDQTSAK  120
KSKGNSGNEK ATETGKATSG SGNEGGSQSA ESGSEGSSDA SDDNNQQTRS TMALVVRLML  180
DFSYMQELSG RANAQNNAVN SSAQGPMPGK PMVAMPATNL NIGMDLWNSS AAGTVKLRPS  240
TGVTSAAAPP MVAPDHQWIQ DERELKRQKR KQSNRESARR SRLRKQEELT QICGPDSFQS  300
LGETNASGEG NS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284RRSRLRK
2278285RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667696.11e-148PREDICTED: G-box-binding factor 1
SwissprotP427742e-73GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A0J8B2I21e-147A0A0J8B2I2_BETVU; Uncharacterized protein
STRINGXP_010667696.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.18e-60G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]