PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018518-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family BES1
Protein Properties Length: 324aa    MW: 34408.2 Da    PI: 9.0475
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018518-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222251.5e-6931461148
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                      g++gr ptwkErEnnk+RERrRRaiaaki++GLRaqGnyklpk++DnneVlkALcreAGw+v+dDGttyrkg++p+   e+ag+sa++s +ssl
  AHYPO_018518-RA   3 GATGRLPTWKERENNKKRERRRRAIAAKIFTGLRAQGNYKLPKHCDNNEVLKALCREAGWIVDDDGTTYRKGCNPP-PVEMAGTSANISACSSL 95 
                      5899************************************************************************.9**************** PP

           DUF822  95 qsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                      q s++ssa +sp++sy+asp+sssfpsps++ds+++   + llp+l++l++++ 
  AHYPO_018518-RA  96 QPSPQSSAYPSPIPSYHASPTSSSFPSPSRYDSNPS---TYLLPFLRNLASIPT 146
                      **********************************98...599999999988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.3E-645129IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGGATGRLPT WKERENNKKR ERRRRAIAAK IFTGLRAQGN YKLPKHCDNN EVLKALCREA  60
GWIVDDDGTT YRKGCNPPPV EMAGTSANIS ACSSLQPSPQ SSAYPSPIPS YHASPTSSSF  120
PSPSRYDSNP STYLLPFLRN LASIPTNLPA IRISNSAPVT PPLSSPTSKG SKRKADWESL  180
SNSNGSGSNS QQSACHPAFA VSAPSSPTRR NNITPLTIPE CDESDASTVD SGRWFSFQSG  240
PTYGIPTSPT FNLVKQAAAQ TSSMQGALNG NVSLGWGGAI ERGRGSEFEF GNGAAVMAWE  300
GERIHEVGVD DLELTLGSAK AKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-28787372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-28787372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-28787372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-28787372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00237DAPTransfer from AT1G75080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680895.11e-176PREDICTED: BES1/BZR1 homolog protein 2
SwissprotQ94A431e-109BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A0K9R4T91e-173A0A0K9R4T9_SPIOL; Uncharacterized protein
STRINGXP_010680895.11e-176(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.22e-90BES1 family protein