PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018564-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 302aa    MW: 33470.3 Da    PI: 5.7392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018564-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-2084134155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  AHYPO_018564-RA  84 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 134
                      59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.44E-3384141No hitNo description
PfamPF008475.3E-1385134IPR001471AP2/ERF domain
SMARTSM003805.6E-3685148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3085142IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2285142IPR016177DNA-binding domain
PROSITE profilePS5103223.74985142IPR001471AP2/ERF domain
PRINTSPR003679.3E-118697IPR001471AP2/ERF domain
PRINTSPR003679.3E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSFPKVVRIS VTDADATDSS SDDEVCIQRR RVKRFVNEVN IEPCSSCSAT TRVVDDVVLK  60
RRQRNKKKGK CSSVKQVQVN KSEKKYRGVR QRPWGKWAAE IRDPLRRVRL WLGTYDTAEE  120
AAMVYDNAAI QLRGPHALTN FSPPTKLFLS STSSSEDGSL SHPHHPSSIC SPTSVLRFQP  180
ESEPTSPTEA RKAPVPRPIK EEKKDEELVS GPTTSPYVSS FDSLFPSDFF DFDSTVANMP  240
EFFGNGDYGG HLFGDDCKTG ALLDGNFDFD FDLNFGYSGQ TGNDYFPDIG DIFGSDPLVA  300
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2184141159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838632.11e-104ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0K9RK751e-103A0A0K9RK75_SPIOL; Uncharacterized protein
STRINGXP_010676352.11e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-41cytokinin response factor 2