PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018705-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 233aa    MW: 26355.7 Da    PI: 7.3451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018705-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.3e-204595256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f ta+eAa a+++a+ kl+ge
  AHYPO_018705-RA 45 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAQEAALAYDNAAFKLRGE 95
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-3444104No hitNo description
SuperFamilySSF541715.62E-2345103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-3245103IPR001471AP2/ERF domain
PROSITE profilePS5103222.73445102IPR001471AP2/ERF domain
SMARTSM003803.6E-3845108IPR001471AP2/ERF domain
PRINTSPR003675.8E-114657IPR001471AP2/ERF domain
PfamPF008475.9E-144695IPR001471AP2/ERF domain
PRINTSPR003675.8E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGIAHYPSLG FLPSSMEVSP TNSHKKLSFL APKPNPMKQN KPTKLYRGVR QRHWGKWVAE  60
IRLPKNRTRL WLGTFETAQE AALAYDNAAF KLRGEFAHLN FPHLKHNGAH VATQFGYYKP  120
LHSSVNAKLE AICQNLEISQ KQGKTEETKK PYFSSSNQIS MEKISSMESN YEFLIPKSEV  180
LSVSDESLAA SSSPESGVTY LDFTESFSWD EHEIDNLNLD KFPSLEIDWD SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2244102160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680571.11e-104PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotO656657e-68ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E41e-67RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM4GX447e-91M4GX44_SALBI; DREB
STRINGXP_010680571.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-65related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]