PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018782-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 216aa    MW: 25296.8 Da    PI: 8.26
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018782-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192144123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     y C+ Cg + s ks+L++H+ + H
  AHYPO_018782-RA 21 YYCEFCGICRSKKSLLNSHLISdH 44
                     89******************9888 PP
2zf-C2H222.43.2e-076788223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cg +F+ + +Lk+H+ +H
  AHYPO_018782-RA 67 TCEECGVTFKKPAHLKQHMLSH 88
                     7*******************99 PP
3zf-C2H221.27.8e-0794118123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp  dC+ s++rk++L rH+  H
  AHYPO_018782-RA  94 FSCPvnDCNASYRRKDHLSRHMLQH 118
                      89********************988 PP
4zf-C2H213.80.00017123148123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kCp  +C+k Fs + n  rH r  H
  AHYPO_018782-RA 123 FKCPieNCNKEFSVHGNISRHVRDfH 148
                      89*******************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5382149IPR007087Zinc finger, C2H2
SMARTSM00355162144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.116693IPR007087Zinc finger, C2H2
SMARTSM003550.00676688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-56784IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-1179120No hitNo description
Gene3DG3DSA:3.30.160.604.1E-1485120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7E-494118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.05594123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-6121149No hitNo description
Gene3DG3DSA:3.30.160.604.7E-6121146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGEEPKGREE IGPIFRDIRR YYCEFCGICR SKKSLLNSHL ISDHKEEMEK KRELEGEEGE  60
GQMSCNTCEE CGVTFKKPAH LKQHMLSHSF ERPFSCPVND CNASYRRKDH LSRHMLQHEG  120
KLFKCPIENC NKEFSVHGNI SRHVRDFHKD KPESDGKKGQ DKHVCQEIGC GKEFRYASHF  180
EIFRNILCRS QVYDVFFQYQ VPQGTYQKIS PIRKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-126718623127Aart
2i13_B4e-126718623127Aart
2yt9_A8e-1359148189zinc finger-containing protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749253.12e-92transcription factor IIIA-like
SwissprotQ84MZ43e-51TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E85e-76A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.11e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-49transcription factor IIIA