PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018875-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37454.7 Da    PI: 9.6545
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018875-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3698.5e-1132833218301
        GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksi 108
                      +s      +q+ms++aerda+i+ern+a+ ek++a+ erdma +qrd+a++er++a++erdn+l+al++++n ++   +a+p+++q+++g k++
  AHYPO_018875-RA  28 QS-----MKQIMSIMAERDAAIQERNMAINEKNKALEERDMAIMQRDTAIQERHEAIMERDNALAALQYRQNPMNggsNACPPNCQISRGLKHM 116
                      33.....35***************************************************************9999999*************** PP

        GAGA_bind 109 dslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.............. 186
                      ++ +  +++  ++++ +++ re +  +alp+ +  +e+++++k+k+ ++++        +++kk++k  +k+k++++d +              
  AHYPO_018875-RA 117 HHPEPhVQHpLHVGEASYDGREVQVPDALPLPSISSENTKSRKVKRLKEPSA------ASPNKKTSKGGRKSKRDGEDLNkimfsksqewkgme 204
                      **98854556899**********99999998887777777777664443332......222222222222222222221113333344578999 PP

        GAGA_bind 187 .............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
                                    k+++k  dl+ln+v++Dest+P+PvCsCtG+ rqCYkWGnGGWqS+CCtttiS+yPLP+++++r+aR++grKmS++af+k
  AHYPO_018875-RA 205 dmsgsdgykqlggLKSDWKGADLGLNQVAFDESTMPPPVCSCTGVYRQCYKWGNGGWQSSCCTTTISMYPLPAVPNKRHARVGGRKMSGSAFSK 298
                      ********************************************************************************************** PP

        GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      lL++Laa+G+dls+pvDLkdhWAkHGtn+++tir
  AHYPO_018875-RA 299 LLSRLAADGHDLSTPVDLKDHWAKHGTNRYITIR 332
                      *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.9E-1381332IPR010409GAGA-binding transcriptional activator
PfamPF062171.9E-10021332IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNFSTFIWWR FWILDVIFLF QWLMSQSQSM KQIMSIMAER DAAIQERNMA INEKNKALEE  60
RDMAIMQRDT AIQERHEAIM ERDNALAALQ YRQNPMNGGS NACPPNCQIS RGLKHMHHPE  120
PHVQHPLHVG EASYDGREVQ VPDALPLPSI SSENTKSRKV KRLKEPSAAS PNKKTSKGGR  180
KSKRDGEDLN KIMFSKSQEW KGMEDMSGSD GYKQLGGLKS DWKGADLGLN QVAFDESTMP  240
PPVCSCTGVY RQCYKWGNGG WQSSCCTTTI SMYPLPAVPN KRHARVGGRK MSGSAFSKLL  300
SRLAADGHDL STPVDLKDHW AKHGTNRYIT IR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759836.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_021759837.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_021866753.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021866754.10.0protein BASIC PENTACYSTEINE6
RefseqXP_021866755.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-128BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0K9R5U00.0A0A0K9R5U0_SPIOL; Uncharacterized protein
STRINGXP_010670883.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-117basic pentacysteine 6