PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018876-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

BBR-BPC

Protein Properties

Length: 65aa MW: 7334.51 Da PI: 9.8348

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018876-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	59.3	1.8e-18	1	34	260	293
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHG 293 mS++af+klL++L+aeG+dls+pvDLkdhWAkH AHYPO_018876-RA 1 MSGSAFSKLLSRLTAEGHDLSTPVDLKDHWAKHA 34 9********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.4E-15	1	34	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MSGSAFSKLL SRLTAEGHDL STPVDLKDHW AKHAIRWQFA LCYLLYGIVG HVQKHRVWSN 60 LVNM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q5VSA8	9e-14	BBRD_ORYSJ; Barley B recombinant-like protein D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	9e-16	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	AHYPO_018876-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]