PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018889-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 92aa MW: 10606.2 Da PI: 10.6255

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018889-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.4e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++q+G g+W+tI+ g+ R +k+c++rw +yl AHYPO_018889-RA 17 KGLWSPEEDERLRNYINQHGHGCWSTIPINAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.255	12	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-24	13	67	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-12	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	17	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.8E-22	19	91	IPR009057	Homeodomain-like
CDD	cd00167	6.55E-11	20	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-8	68	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.407	69	91	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGYKPLQESK PKIKHRKGLW SPEEDERLRN YINQHGHGCW STIPINAGLQ RNGKSCRLRW 60 INYLRPGLKR GTFSPQEEEK ILNLHSALGN K*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021730474.1	2e-51	transcription factor LAF1-like
Swissprot	Q9M0K4	1e-38	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A0D2UAY0	2e-45	A0A0D2UAY0_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NHU7	2e-45	A0A1U8NHU7_GOSHI; transcription factor WER-like
STRING	XP_010667574.1	4e-47	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	3e-41	myb domain protein 45

Link Out ? help Back to Top
Phytozome	AHYPO_018889-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]