PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018890-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 208aa    MW: 23485.4 Da    PI: 8.5942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018890-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-152076146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     +g+W++eEd++l+d  +   g+             W++Ia++++ gRt++++k+++++
  AHYPO_018890-RA 20 KGAWSPEEDQKLIDFLRNNNGHhvkwkslpmhagLWAAIAERLP-GRTDNDVKNHYNS 76
                     79******************99**********************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.3E-12284IPR009057Homeodomain-like
PROSITE profilePS5129415.3291582IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-161780IPR009057Homeodomain-like
SMARTSM007173.2E-101980IPR001005SANT/Myb domain
PfamPF002492.6E-132077IPR001005SANT/Myb domain
CDDcd001671.70E-82275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRKPTNCSIK LCDNINNKKK GAWSPEEDQK LIDFLRNNNG HHVKWKSLPM HAGLWAAIAE  60
RLPGRTDNDV KNHYNSCLKK HKTANQIELK FTQPESRTTR HMVQWESVRL ETEARLVFSL  120
QNPSECYATK SDKFLYLWNT EVGESFRNGR ASKTNWALNS PEACSGVTGQ VGPLIRNEQQ  180
KSTYSGPADS GDCSDTMNML LDSPTID*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667573.13e-64PREDICTED: transcription factor MYB30-like
TrEMBLA0A0J8B6621e-48A0A0J8B662_BETVU; Uncharacterized protein
STRINGXP_010667573.11e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-31myb domain protein 17