PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018910-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 315aa    MW: 35207.6 Da    PI: 7.3838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018910-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind121.74e-38231152103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isws++g++f+v++++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+h+sFk+g+k+ll+
  AHYPO_018910-RA  23 FLTKTYQLVEDPAINDVISWSDDGSTFIVWNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFAHESFKRGEKQLLC 107
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  AHYPO_018910-RA 108 EIQRRKTT 115
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-5919112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-3920112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3323112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVSSSRAETA AGGDSHRSIP TPFLTKTYQL VEDPAINDVI SWSDDGSTFI VWNPTVFARD  60
LLPRYFKHNN FSSFVRQLNT YGFRKVVPDR WEFAHESFKR GEKQLLCEIQ RRKTTAIAPT  120
TATVNSVANQ RQISPEESCG EQVISNSPPF GIPASNCSIN NTSNGNIKFD LIDENSRLKR  180
ANLELNRELT SMKALCNNIF ALMTNFATSQ GNTTATCSRT HCMKQALDLL TRKEFESPVL  240
FSIGEDSESE SPKIFGVPIG MKRAREEGSD KGVVKVQADL MKTNCEIKLE PSDSDNQETS  300
WLKLCHQHNQ RVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252311620124Heat shock factor protein 1
5d5u_B3e-252311429131Heat shock factor protein 1
5d5v_B3e-252311429131Heat shock factor protein 1
5d5v_D3e-252311429131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693477.11e-141PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW42e-88HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0K9RC681e-132A0A0K9RC68_SPIOL; Uncharacterized protein
STRINGXP_010693477.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-90heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]