PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018938-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 288aa    MW: 30999.1 Da    PI: 7.0349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018938-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.3e-10146190554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  AHYPO_018938-RA 146 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 190
                      99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15139200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-15143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7146190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MANNPENPNQ DFLEQLLEMQ NFAAAVGGEP NLAGNDMGLG HGAPMMLQLN SGPSGFHGPP  60
VFPLGLSLDQ AGKPTSGFIK HDEGSSSINK RFRDDPQHHL VDASANSAPK NVFHGHPMSN  120
PVPVGPQQPA VRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPS VNKTDRAAML  180
DEIVDYVKFL RLQVKVLSMS RLGGAGAVVP LEEGGEGGRG QPVWEKWSND GTERQVAKLM  240
EENVGAAMQF LQSKALCIMP ISLASAIYHT QPPDAASLVK PESNPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679161.11e-171PREDICTED: transcription factor UNE12
SwissprotO227681e-107UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9QWS91e-133A0A0K9QWS9_SPIOL; Uncharacterized protein
STRINGXP_010679161.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]