PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019033-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 133aa    MW: 14803.1 Da    PI: 7.7467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019033-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-201364256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+  ++g+
  AHYPO_019033-RA 13 KYRGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFNTAEEAARAYDRAAYTMRGH 64
                     8********.**********422...25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-151364IPR001471AP2/ERF domain
CDDcd000183.52E-171372No hitNo description
SuperFamilySSF541711.63E-231373IPR016177DNA-binding domain
PROSITE profilePS5103223.4061371IPR001471AP2/ERF domain
SMARTSM003803.0E-341377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311373IPR001471AP2/ERF domain
PRINTSPR003677.7E-121425IPR001471AP2/ERF domain
PRINTSPR003677.7E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEDDKNYGGG EVKYRGVRKR PWGKYAAEIR DSTRHGARVW LGTFNTAEEA ARAYDRAAYT  60
MRGHLAILNF PHEYNMPRAG SSSSRGGASS SSSRNAGQDT GKEVFEFEYL DDNLLEELLG  120
YDDNANKNNA RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-411311414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827144.12e-49PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T06e-50A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000348718e-47(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]