PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019044-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 304aa    MW: 33901.7 Da    PI: 7.1016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019044-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-1394145155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r +h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+++  A+e++k+L+
  AHYPO_019044-RA  94 QRLTHITVERNRRKQMNEHLAVLRSLMPES---YAQRGDQASVVGGAIEFVKELE 145
                      699***************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1592157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.00E-1292149No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1392149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.82493144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1094145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-899150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSEMAAIESI PNYNDFFNFM VYDTVNAPLY GWNIGITDDV CLSETPQAHG DLGLVGQNPG  60
RKTDSRKVSL GVQGRKKRRR RPKICKNKEE AETQRLTHIT VERNRRKQMN EHLAVLRSLM  120
PESYAQRGDQ ASVVGGAIEF VKELEHLVHS LEIQKLNFLQ KTGMNSEQGE TAPSTTHSST  180
LLTPSFTEFP SDSEQTFSLV GNKCTLKAPV ADVEVTLIET HANLRILTKK NPRQLSKLVS  240
GFHTLRLTVL HLNVTSLDPL VQYSISVKVE EGCQLTSVDS IAEAVHHMLS IIEQDCVPFL  300
LTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480RKKRRRR
27580KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852436.11e-145transcription factor bHLH71-like
SwissprotQ9C7T44e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0J8E3C31e-143A0A0J8E3C3_BETVU; Uncharacterized protein
STRINGXP_010695562.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]