PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019052-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB_related

Protein Properties

Length: 98aa MW: 11240.9 Da PI: 9.9498

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019052-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.9	1.4e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W++ ++ g++R++k+c++rw +yl AHYPO_019052-RA 15 KGPWTQEEDEKLVSYIKKHGLGSWRALPKAAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-25	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.237	10	66	IPR017930	Myb domain
SMART	SM00717	1.8E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-18	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.58E-23	16	88	IPR009057	Homeodomain-like
CDD	cd00167	1.75E-11	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-6	66	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MGRSPCCDDN IELKKGPWTQ EEDEKLVSYI KKHGLGSWRA LPKAAGLNRC GKSCRLRWTN 60 YLRPDIKRGH FNEQEEDMII KLHSVVKNCS PSSRKNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-16	12	88	4	79	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768213.1	6e-51	transcription factor MYB39-like
Swissprot	Q9S9Z2	3e-42	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0J8B8I5	9e-49	A0A0J8B8I5_BETVU; Uncharacterized protein
TrEMBL	A0A0K9R2G5	5e-49	A0A0K9R2G5_SPIOL; Uncharacterized protein
STRING	XP_010695546.1	2e-49	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-47	myb domain protein 9

Link Out ? help Back to Top
Phytozome	AHYPO_019052-RA

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]