PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019129-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 329aa MW: 38502.1 Da PI: 4.4113

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019129-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.3e-12	89	173	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++q + +L+e+ e+ +l+r++l+ +W +v++++++ +rs C+++++ l+ +ykk+k+ ++ + s++++f++++ AHYPO_019129-RA 89 WSEQATSVLLEIWGERFLQLGRSSLRSDDWNDVAERVSDVTRsKRSVLDCRNRLNVLKLKYKKEKAKVSGI-GGGNSKWVHFKKMD 173 ***********************************76554399******************9997.556669*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-17	87	173	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDRRSNYSYP RRSKPQKFFV EDDDDDENDV VLAGIPDSDT DEEENNDDDD EDFSTHQSRR 60 TPTRHRRKQR KLSSYNHQFT PNSSNNSDWS EQATSVLLEI WGERFLQLGR SSLRSDDWND 120 VAERVSDVTR SKRSVLDCRN RLNVLKLKYK KEKAKVSGIG GGNSKWVHFK KMDVFLTMLP 180 RQLQQQEQFG LACGVDSGEF VFMNPRFYLD HSNACDEMRD SPGNSEFELG EDDEGEDEED 240 DEEEVNEEEA NESYRMLSES IKRVGDIYEK IEDSKKVHMM ELERMRLEFQ KELEEQKKEM 300 MDRTKTEIAK LKEKDEEGSD CSVENMSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	69	RHRRKQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723675.1	1e-142	trihelix transcription factor ASIL1-like
TrEMBL	A0A0K9RIX0	1e-136	A0A0K9RIX0_SPIOL; Uncharacterized protein
STRING	XP_010688178.1	1e-138	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-57	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019129-RA