PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019149-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 301aa    MW: 33321.3 Da    PI: 4.5636
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019149-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.92.9e-37231142102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+++g++f+v++++ fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+k+ll+
  AHYPO_019149-RA  23 FLTKTYQLVEDPAINDVISWNDDGSTFIVWNTTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANESFRRGEKQLLC 107
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  AHYPO_019149-RA 108 EIQRRKT 114
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3815107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5819112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.21E-3520112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVSPSREESG SGGESQRSVP TPFLTKTYQL VEDPAINDVI SWNDDGSTFI VWNTTVFARD  60
LLPRYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANESFRR GEKQLLCEIQ RRKTAAIATP  120
AIPEAQQRQI SPGDSCEEQV ISNSPPLGIP TTIYSNNAVN NCINSNTKVD LLDENSRLKR  180
QNMELNRELT NMKSLCNNIF ALMTNFATSQ GNITATSSST NSIKQALNLL PPMDFECAVT  240
VTAGEGSGSE SPKIFGVPIG LKRVREEGSD EDVVKVQDDM METDCELKCE PCDVSGVIDV  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251011417131Heat shock factor protein 1
5d5v_B3e-251011417131Heat shock factor protein 1
5d5v_D3e-251011417131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693477.11e-148PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW43e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0K9RC681e-131A0A0K9RC68_SPIOL; Uncharacterized protein
STRINGXP_010693477.11e-147(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.17e-82heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]