PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019158-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 248aa MW: 28102.7 Da PI: 6.5181

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019158-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.6	4.8e-29	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k+++gkw+vtk+++eH+H+l+p AHYPO_019158-RA 83 FYNAYATHVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KVVRQRAETRVGCRAMILVRKMSSGKWVVTKFVKEHTHPLTP 170 ****************************************9988..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-26	83	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MHQLDYGVDE DVDGEVVGSS VDTEGRIGDE NEMGGSSSIE GGQSQDDKMN DELSEKDLIP 60 VGEPLNEPFV GQEFESEAAA HAFYNAYATH VGFVIRVSKL SRSRRDGSAI GRALVCNKEG 120 YRMPDKREKV VRQRAETRVG CRAMILVRKM SSGKWVVTKF VKEHTHPLTP GKGRKDLIFE 180 QYPTEHDKIR ELSQQLAVEK KRVTIYKRHL EMLFEHIEEH NQSLSKKIQH IVDSVTEFEA 240 KEKDKCR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021752153.1	1e-161	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251R003	1e-130	A0A251R003_PRUPE; Uncharacterized protein
STRING	XP_010672213.1	1e-156	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-90	FAR1 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019158-RA