PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019216-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 328aa    MW: 37476.1 Da    PI: 6.2738
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019216-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35161082103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F++k+y++++d+++++li w +  nsfvv+++ ef++ +Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll+
  AHYPO_019216-RA  16 FVMKTYQMVSDPSTDHLIVWGRAHNSFVVVEPLEFSQLILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLR 100
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i rkk++
  AHYPO_019216-RA 101 NIARKKHS 108
                      *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-5112105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.57E-3413105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEQDHGSNNA NMIAPFVMKT YQMVSDPSTD HLIVWGRAHN SFVVVEPLEF SQLILPAYFK  60
HNNFSSFVRQ LNTYGFRKVD PDKWEFANEW FLRGQKHLLR NIARKKHSTS RPHHQLQDDD  120
DHELLVEIER LREEQKTLDD ELRGMNRRLE ATERRPQQMM AFLCKVVEDP EILPRVMMDR  180
DRAKHICGGA EVGVSSPEKR RRLLMMSSST SSSGLAQSNN SEDDEGTMLG ATSSSHINTE  240
ADTFQHSPSS PNTFNSPMFL NRLGSSHEQY NCISVTSNPL PLDLVPNLDR LQMGLDNSIY  300
LGHNPNYMPL KEDNKPPYPF SLLDGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-251311017125Heat shock factor protein 1
5d5u_B1e-24610519129Heat shock factor protein 1
5d5v_B1e-24610519129Heat shock factor protein 1
5d5v_D1e-24610519129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198202KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741537.10.0heat stress transcription factor C-1-like
SwissprotQ9LV527e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0M4GX431e-103A0A0M4GX43_GOSHI; HSF31
STRINGXP_010688193.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-77heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]