PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019231-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 270aa    MW: 30417.7 Da    PI: 8.4512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019231-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-1975132255
              AP2   2 gykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr++  +g+WvAeIr+p +  n+  kr +r +lg+f ta eAa a+++a+k+++g
  AHYPO_019231-RA  75 TFRGVRQRT-WGKWVAEIREPINntNQqtKRsRRLWLGTFCTAIEAALAYDEAAKAMYG 132
                      69****999.**********655455588667************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.56E-2774141No hitNo description
SMARTSM003803.6E-3375146IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1875141IPR016177DNA-binding domain
PROSITE profilePS5103221.57575140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2775141IPR001471AP2/ERF domain
PfamPF008476.5E-1476132IPR001471AP2/ERF domain
PRINTSPR003671.1E-87687IPR001471AP2/ERF domain
PRINTSPR003671.1E-8106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESQTSERAY MNARRRRNNG YNSVAEILQK WKIHNQQLAN STINKPQKTL RKGPSRGSRK  60
GCMPGKGGPQ NLDCTFRGVR QRTWGKWVAE IREPINNTNQ QTKRSRRLWL GTFCTAIEAA  120
LAYDEAAKAM YGSSAILNFP HRKEPEDQGL ESKNREGIEG SQGGYKKDGL MHLDGGNSLN  180
LGFDYTQEWG MDSIDGNFGL KQEEDNYEFV DGNNGLFYSD CWFNDRSCDG MMSTYKLQPT  240
LSGSLGFDFT NSDFLRAHIS NNTSLDAFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1776142362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-16761411573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676824.11e-112PREDICTED: dehydration-responsive element-binding protein 2E
TrEMBLA0A1B1W1W22e-95A0A1B1W1W2_9CARY; Dehydration responsive element binding transcription factor 2C
STRINGXP_010676824.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.14e-34ERF family protein