PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019266-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 348aa MW: 38533.9 Da PI: 6.1147

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019266-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	136	156	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd C FaHg AHYPO_019266-RA 136 ACSEFRK-GGCKKGDCCEFAHG 156 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0067	131	157	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.272	131	158	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	166	189	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.268	166	190	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MMIGETHRNH QIHVPPWEES FNQNTQINSP TFSSPLYSNG DGFSPNSTSY YDAVLASLRR 60 YLVSDTGENE SPTKEELPGD FDFVAEDYDD DFFMYDFKVR KCNRARAHDW TECPFAHPGE 120 KARRRDPRKF NYSGTACSEF RKGGCKKGDC CEFAHGVFEC WLHPARFRTQ ACKDGPGCKR 180 RVCFFAHTPD QLRPMPGLGS PRGTTGGYFS GSEEATMGSG SPTVEELVAS LRNLQLNKVK 240 SMPSSWVSGS PVFGSPRGVG GPAMNRAGFF SLPTTPTGPR VGYWDKKEFG DEEDEPIMER 300 VESGRVLRAR MFEKLSKENP LDGSGSPLSV SVPGPGPDFG WVSDLIE*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MMIGETHRNH QIHVPPWEES FNQNTQINSP TFSSPLYSNG DGFSPNSTSY YDAVLASLRR  60
YLVSDTGENE SPTKEELPGD FDFVAEDYDD DFFMYDFKVR KCNRARAHDW TECPFAHPGE  120
KARRRDPRKF NYSGTACSEF RKGGCKKGDC CEFAHGVFEC WLHPARFRTQ ACKDGPGCKR  180
RVCFFAHTPD QLRPMPGLGS PRGTTGGYFS GSEEATMGSG SPTVEELVAS LRNLQLNKVK  240
SMPSSWVSGS PVFGSPRGVG GPAMNRAGFF SLPTTPTGPR VGYWDKKEFG DEEDEPIMER  300
VESGRVLRAR MFEKLSKENP LDGSGSPLSV SVPGPGPDFG WVSDLIE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723483.1	0.0	zinc finger CCCH domain-containing protein 23-like
Swissprot	O82199	1e-95	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A0K9RHJ2	1e-172	A0A0K9RHJ2_SPIOL; Uncharacterized protein
STRING	XP_010688398.1	1e-169	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-89	C3H family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019266-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]