PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019273-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 452aa MW: 51110.4 Da PI: 6.5773

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019273-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.9	1.7e-35	23	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....... 79 lp+G++F+Ptd+el+ e+L+ kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ AHYPO_019273-RA 23 LPAGVKFDPTDQELI-EHLNSKVEEKSskshplIDVFIPtIQGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqg 114 799**********.99***996665554443334776646******.555666799**************7333455554 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g ++g+kk+Lv+y g+++k+ekt+Wvmh+y+l AHYPO_019273-RA 115 gETRWHKTGKTRPVMV-NGIQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 165 4778********.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-38	12	184	IPR003441	NAC domain
PROSITE profile	PS51005	31.966	23	184	IPR003441	NAC domain
Pfam	PF02365	3.5E-16	24	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MQNLKNINLV DPNTALDVDW VGLPAGVKFD PTDQELIEHL NSKVEEKSSK SHPLIDVFIP 60 TIQGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DLQGGETRWH 120 KTGKTRPVMV NGIQKGCKKI LVLYTNFGKN RKPEKTNWVM HQYHLGQDEE EKEGELVVSK 180 IFYQTQPRQC NWSSERSPTT GEGSEASGRR ESGSNTSKCK EVMINNHDDR DDQMGISAAS 240 LSSFTDLDLQ HLRASSGEHF SFVPFVRRET DAIRATNDDD HNDPISQQQQ QQQHQLHQHH 300 HVHNPDLVSQ DHHHYHIQQA NCNATTACFN ISTPSHSISQ IISPPPHHAS IILDDHSFQH 360 VSRIMQLQNQ TLIHQQEQQE EQQHDKLVAS SAADLEEIIM ACTSSASHSA VVTDALKEES 420 SITNPAPSKS EWIKFSSSFW HDPHHSDDHH G*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MQNLKNINLV DPNTALDVDW VGLPAGVKFD PTDQELIEHL NSKVEEKSSK SHPLIDVFIP  60
TIQGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DLQGGETRWH  120
KTGKTRPVMV NGIQKGCKKI LVLYTNFGKN RKPEKTNWVM HQYHLGQDEE EKEGELVVSK  180
IFYQTQPRQC NWSSERSPTT GEGSEASGRR ESGSNTSKCK EVMINNHDDR DDQMGISAAS  240
LSSFTDLDLQ HLRASSGEHF SFVPFVRRET DAIRATNDDD HNDPISQQQQ QQQHQLHQHH  300
HVHNPDLVSQ DHHHYHIQQA NCNATTACFN ISTPSHSISQ IISPPPHHAS IILDDHSFQH  360
VSRIMQLQNQ TLIHQQEQQE EQQHDKLVAS SAADLEEIIM ACTSSASHSA VVTDALKEES  420
SITNPAPSKS EWIKFSSSFW HDPHHSDDHH G*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723496.1	0.0	protein sprouty-like isoform X3
Swissprot	Q9M0F8	1e-137	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A438IHM4	1e-168	A0A438IHM4_VITVI; NAC domain-containing protein 75
TrEMBL	A5BJQ5	1e-168	A5BJQ5_VITVI; Uncharacterized protein
STRING	XP_010688374.1	1e-179	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-116	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	AHYPO_019273-RA

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]