PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019388-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 277aa    MW: 31255 Da    PI: 9.1642
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019388-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1111.3e-34591981128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                      lp+G+rF+Ptd+el+ ++L++k+  ++     ++++   ++   +i++++P++Lp  vk++ +  +fF++ +k+y+tg+rk+r+++      + 
  AHYPO_019388-RA  59 LPAGVRFDPTDQELI-QHLEEKAGPDDgfhplIDEFIPtLEGEnGICYTHPEKLP-GVKKDGQVRHFFHRPSKAYTTGTRKRRKVHtdedgsET 150
                      799************.99****99888886553333322443346**********.677778889******************74444655578 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +W++tgk+++v+  ++++ g kk+Lv+y   g+++k++kt+Wvmh+y+l
  AHYPO_019388-RA 151 RWHKTGKTRPVII-NSRVRGHKKILVLYtnYGKQKKPQKTNWVMHQYHL 198
                      8************.999***********65589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3753217IPR003441NAC domain
PROSITE profilePS5100533.2859217IPR003441NAC domain
PfamPF023654.4E-1660198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTWCNESNDV ILTLEKNNNP SSTSKPNDNN NGAKPKSCPS CGYQIKSHQQ ARINDLPGLP  60
AGVRFDPTDQ ELIQHLEEKA GPDDGFHPLI DEFIPTLEGE NGICYTHPEK LPGVKKDGQV  120
RHFFHRPSKA YTTGTRKRRK VHTDEDGSET RWHKTGKTRP VIINSRVRGH KKILVLYTNY  180
GKQKKPQKTN WVMHQYHLGV DEEEKDGELV VSKVFYQTQP RQCGSILKVN GRVTNPSQRN  240
EMGEYYSNSS IISFEQRGNS NTKGSASTTL FPFCCP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733365.11e-168LOW QUALITY PROTEIN: NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLT2CBH31e-126T2CBH3_9CARY; Putative NAC domain class transcription factor
STRINGXP_010689784.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]