PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019392-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 663aa    MW: 73206.3 Da    PI: 6.3117
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019392-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.48e-29209262155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  AHYPO_019392-RA 209 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 262
                      79*******************.********************************8 PP
2Response_reg783.4e-26331411109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ + +l+++l+  +y ev+ +  +e al+ll+e++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a +++  + + +  
  AHYPO_019392-RA  33 VLVVDDDPTCLTILERMLRTCRY-EVTKTNRAENALTLLRENRngFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKHVVMKGVTH 124
                      89*********************.***************99999***********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +e+l +
  AHYPO_019392-RA 125 GACDYLIKPVRIEALKN 141
                      *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.8E-17110659IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.9E-4230168No hitNo description
SuperFamilySSF521721.57E-3530155IPR011006CheY-like superfamily
SMARTSM004483.4E-2931143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.34432147IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2333141IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.20E-2634146No hitNo description
SuperFamilySSF466893.05E-20206266IPR009057Homeodomain-like
PROSITE profilePS5129411.048206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-30208267IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-25209262IPR006447Myb domain, plants
PfamPF002499.4E-8211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MNLGGGVVGS MTLHNSTVNR KPADDNFPVG LRVLVVDDDP TCLTILERML RTCRYEVTKT  60
NRAENALTLL RENRNGFDVV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDSKHVVMK  120
GVTHGACDYL IKPVRIEALK NIWQHVVRKK RTEYKDIEQS GSWDEGDRQQ KQDDTVTSPA  180
NDGSWKNAKR KSGEDDEPEE KDDSTTLKKP RVVWSVELHQ QFVAAVNQLG IDKAVPKKIL  240
ELMNVPGLTR ENVASHLQKY RLYLRRLSGV SQHNSSFMPQ DSSFSSMSSL GGIDLQTLAA  300
TGQLSAQTLA AYTRLPPTIK PGMSMPFVDQ RNLFSFENNK LRYGEPQQAQ ISNVSKQMNL  360
LHGIPTTMEP KQLAGLNQSS QTLGNLSMQT NASISHQNNS LLMQQMVPQQ SRVQIINENV  420
NCPVSRIQSS IGQSLQSNGT GSAVLPRNAV PYDPLPQAAP VVDYSVNQIS ELPGNSFPLG  480
SNPGMTSMTS KGFSQEEVCP DIKVTRGFVG NYDMFSDLQQ KPQDWQLQNP NMSYAGSSQH  540
MQSSVNVAPS VLVNQSYIPS HKNEQNGNAI AGKQMFSTGL ENQHIRTQGI NQNINSVIVN  600
HSSRVKSENI SDVVNPGNSL FSEHYSQDDL MSALLKQQQE GIGSSDYDYD GYTLDNIPSV  660
GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22205268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670914.10.0PREDICTED: two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0K9RPY90.0A0A0K9RPY9_SPIOL; Two-component response regulator
STRINGXP_010670914.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-176response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]