PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019438-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 344aa MW: 38621.8 Da PI: 5.0362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019438-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	177	220	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L AHYPO_019438-RA 177 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 220 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-16	174	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	177	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-12	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-15	178	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-4	178	224	No hit	No description
CDD	cd04873	0.00427	269	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MEMNDDGFLE ELLALRRDQS WETNPSPTHH DQINGFFSSP SWPTFNGLDS TTLLPPTTTP 60 TTTTLDCSSF FVHPSTTPFD PTFPDPGPGP GPNPEHEYSI SMIEAHEQDH MNNNNMIPCK 120 AEHSMTSGEV ELEMEIPPAL SPPAAFNIGV CMMENKRSCN KMSSKVKRVE GQPSKNLMAE 180 RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LERINSLQEE VDTSPHHFNV 240 MTMFNDDKPT DVLVRNSPKF DVDRRKMDTR VEICCAGKPG LLLSTITTLE AMGLEIQQCV 300 ISCFNDFSLQ ANCSEEMEHK ALISSEDIKQ ALFRNAGYGG RCL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MEMNDDGFLE ELLALRRDQS WETNPSPTHH DQINGFFSSP SWPTFNGLDS TTLLPPTTTP  60
TTTTLDCSSF FVHPSTTPFD PTFPDPGPGP GPNPEHEYSI SMIEAHEQDH MNNNNMIPCK  120
AEHSMTSGEV ELEMEIPPAL SPPAAFNIGV CMMENKRSCN KMSSKVKRVE GQPSKNLMAE  180
RRRRKRLNDR LSMLRSVVPK ISKMDRTSIL GDTIDYMKEL LERINSLQEE VDTSPHHFNV  240
MTMFNDDKPT DVLVRNSPKF DVDRRKMDTR VEICCAGKPG LLLSTITTLE AMGLEIQQCV  300
ISCFNDFSLQ ANCSEEMEHK ALISSEDIKQ ALFRNAGYGG RCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	186	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021722527.1	1e-154	transcription factor bHLH61-like
Swissprot	Q9LSL1	2e-81	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0K9R735	1e-144	A0A0K9R735_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010692682.1	1e-141	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-83	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	AHYPO_019438-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]