PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019478-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 507aa    MW: 56611.9 Da    PI: 4.6104
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019478-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36301212102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y++++d+++++++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  AHYPO_019478-RA  30 FLCKTYDMVDDPATDSVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 114
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  AHYPO_019478-RA 115 SITRRKP 121
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.6E-4022114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3626119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6426119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MESSPTTGET SNGGGNAPTP MSNVNGPPPF LCKTYDMVDD PATDSVVSWS STNNSFVVWN  60
PPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKSITRRK  120
PAHGHGNQHQ HQAQSQTSSV GACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQTTD  180
NQLQTMVQRL QEMEQRQQQM MSFLAKVVRR PGFLAQFVHQ QSESNRRMSE ANKKRRLKQD  240
GVSEGENSTP DGQIVKYQPS GNDPAHAMLC QLRKLDDNFN SSSNKFYFGD SSSTSVMEGE  300
IPANRVSGVT LQEVPPTSVP AYPTSTTNIA AVGHDAFGSK IEMSSVITSS ENLSIPELPD  360
IHGLVIPETL PSISLPQTTD IIPEIPALPD LDQNSVDIPR GNYILDETGD DGFMDLSPAP  420
FEGTSPIDIE KLSPPDIDVL LDDDSWEQFL NRNVIPCDDN EPDMRNIENP TEQTAVQPLE  480
NGWDKHQRMD QLTEQMGLLN SDNKLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-262111911120Heat shock factor protein 1
5d5u_B8e-262811927129Heat shock factor protein 1
5d5v_B8e-262811927129Heat shock factor protein 1
5d5v_D8e-262811927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231238NKKRRLKQ
2232237KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677345.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401521e-167HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0K9RJS20.0A0A0K9RJS2_SPIOL; Uncharacterized protein
STRINGXP_010677345.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-126heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]