PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019492-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HD-ZIP

Protein Properties

Length: 801aa MW: 89100.5 Da PI: 6.4153

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019492-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	134	189	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k AHYPO_019492-RA 134 KKRYHRHTARQIQEMEALFRECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 189 688899***********************************************998 PP
2	START	141.8	6.8e-45	323	558	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...................dsgealrasgvvdmvlallveellddkeqW 72 la++ ++el+k+ a+ep+Wv+ s + +n +e+ + ++ea r++++v+m++ +lv +ld + +W AHYPO_019492-RA 323 LALSSMDELLKLYHANEPLWVRNSsnsmDVLNIEEYCR------LfsnwpsqhngdpfkahyneLRTEATRDKALVIMNSINLVDFFLDAN-KW 409 67899*****************55554444444444......3444556778*********************************. PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEE CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgi 152 e ++ +a+t++ + sg g l+lm+aelq+lsplvp R+ f+Ry+ ++g w+ivd +d q + + ++ R +++pSg+ AHYPO_019492-RA 410 VELFPsivsRAKTIQILVSGvsghasGSLHLMYAELQVLSPLVPtREIHFLRYCHHnAEEGMWAIVDFPIDKFQGSFQlyHTNIPRYRRRPSGC 503 ******************************************************99**********99998899********** PP EEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +i++++ng+skvtwveh++ + p h+++ + v+s +a+gak+w+a lqrqce+ AHYPO_019492-RA 504 IIQDMPNGYSKVTWVEHAEILEEKPtHQIFDVYVHSMTAFGAKRWLAVLQRQCER 558 ****************999999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-20	115	191	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-21	128	196	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	131	191	IPR001356	Homeobox domain
SMART	SM00389	1.5E-18	132	195	IPR001356	Homeobox domain
CDD	cd00086	1.69E-18	134	192	No hit	No description
Pfam	PF00046	6.6E-18	134	189	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	166	189	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.805	313	561	IPR002913	START domain
SuperFamily	SSF55961	1.92E-27	314	560	No hit	No description
CDD	cd08875	2.06E-103	317	557	No hit	No description
SMART	SM00234	1.5E-26	322	558	IPR002913	START domain
Pfam	PF01852	1.7E-37	323	558	IPR002913	START domain
SuperFamily	SSF55961	9.34E-10	576	775	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MYGDCQVALP SSMGGAGDNG IPSTADCSPL FSSTMRNPNN NNNNNNNNNN NNNNNNNVNV 60 NAFSFMSSLP PTFHPFPSIM PVKEERGKEE MMESMSGSEL NMEGHGGLSG NELDSISGDF 120 LNQNQSQPPG TSKKKRYHRH TARQIQEMEA LFRECPHPDD KQRMKLSQEL GLKPRQVKFW 180 FQNRRTQMKA QHDRTDNVIL RAENDNLKNE NYRLQAVLRS LVCPGCGGSS ILGELEYDEQ 240 HLPSRYTGRS LQSLGPTPPP ATLLPPPPSL DLDMGIYSKH FQEPMPPCTQ MLHESSDYPG 300 GGGGSCTSSG LILDEERPLA MDLALSSMDE LLKLYHANEP LWVRNSSNSM DVLNIEEYCR 360 LFSNWPSQHN GDPFKAHYNE LRTEATRDKA LVIMNSINLV DFFLDANKWV ELFPSIVSRA 420 KTIQILVSGV SGHASGSLHL MYAELQVLSP LVPTREIHFL RYCHHNAEEG MWAIVDFPID 480 KFQGSFQLYH TNIPRYRRRP SGCIIQDMPN GYSKVTWVEH AEILEEKPTH QIFDVYVHSM 540 TAFGAKRWLA VLQRQCERVA SLMARNVSDL GVIQSPEARK NFMKLAQRMI KTFSVNISTS 600 GGQSWTALSE NAEDTVRITT RKIMEPGQPN GLILCAVTTT WLPYSHDQVF DLLKNEYRRS 660 QVASNSSQNV ELMLQESCTD PSGSLVVYAT MEVDYIQLVM SGEDPSCIPL LPTGFSIIPL 720 EQTKTTPDTT NNHHTTTGCL LTVGIQVHAS ANPNAKLNLS SVNVINSHIC NVVHQINVAL 780 GNTNGTTSNP LGVPNAVGLV *

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MYGDCQVALP SSMGGAGDNG IPSTADCSPL FSSTMRNPNN NNNNNNNNNN NNNNNNNVNV  60
NAFSFMSSLP PTFHPFPSIM PVKEERGKEE MMESMSGSEL NMEGHGGLSG NELDSISGDF  120
LNQNQSQPPG TSKKKRYHRH TARQIQEMEA LFRECPHPDD KQRMKLSQEL GLKPRQVKFW  180
FQNRRTQMKA QHDRTDNVIL RAENDNLKNE NYRLQAVLRS LVCPGCGGSS ILGELEYDEQ  240
HLPSRYTGRS LQSLGPTPPP ATLLPPPPSL DLDMGIYSKH FQEPMPPCTQ MLHESSDYPG  300
GGGGSCTSSG LILDEERPLA MDLALSSMDE LLKLYHANEP LWVRNSSNSM DVLNIEEYCR  360
LFSNWPSQHN GDPFKAHYNE LRTEATRDKA LVIMNSINLV DFFLDANKWV ELFPSIVSRA  420
KTIQILVSGV SGHASGSLHL MYAELQVLSP LVPTREIHFL RYCHHNAEEG MWAIVDFPID  480
KFQGSFQLYH TNIPRYRRRP SGCIIQDMPN GYSKVTWVEH AEILEEKPTH QIFDVYVHSM  540
TAFGAKRWLA VLQRQCERVA SLMARNVSDL GVIQSPEARK NFMKLAQRMI KTFSVNISTS  600
GGQSWTALSE NAEDTVRITT RKIMEPGQPN GLILCAVTTT WLPYSHDQVF DLLKNEYRRS  660
QVASNSSQNV ELMLQESCTD PSGSLVVYAT MEVDYIQLVM SGEDPSCIPL LPTGFSIIPL  720
EQTKTTPDTT NNHHTTTGCL LTVGIQVHAS ANPNAKLNLS SVNVINSHIC NVVHQINVAL  780
GNTNGTTSNP LGVPNAVGLV *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677364.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Swissprot	A2ZAI7	0.0	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A0K9RGC1	0.0	A0A0K9RGC1_SPIOL; Uncharacterized protein
STRING	XP_010677364.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	AHYPO_019492-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]