PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019532-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

YABBY

Protein Properties

Length: 183aa MW: 20450.9 Da PI: 7.8389

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019532-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.3	2.2e-55	10	166	4	156
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkve...eenlksnvek.eesas 93 + +seq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhCt+l svn+a a + l++ + +++ ++++++ ++ e ++ ++ + + s AHYPO_019532-RA 10 VPTSEQLCYIPCNFCNIVLAVSVPCNNLYDIVTVRCGHCTNLWSVNMAAAFNSLSSPWQHHHHHQPNIHQAPNFGsvgEYRIDNLGSSsKYNYS 103 6789*********************************************9999988888888888666544331002233332222022333 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaa 156 ++ +++++s + ++++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreaf + AHYPO_019532-RA 104 NKAATMRISPPISSNSTEERIINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFMGT 166 3334444455555555555558************************************754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-56	12	165	IPR006780	YABBY protein
SuperFamily	SSF47095	9.56E-6	121	162	IPR009071	High mobility group box domain
CDD	cd00084	5.13E-4	134	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSCVDQAAV PTSEQLCYIP CNFCNIVLAV SVPCNNLYDI VTVRCGHCTN LWSVNMAAAF 60 NSLSSPWQHH HHHQPNIHQA PNFGSVGEYR IDNLGSSSKY NYSNKAATMR ISPPISSNST 120 EERIINRPPE KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFMGTFPSH PFWAHAGDQQ 180 PS*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	4e-35	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	4e-35	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021741749.1	3e-89	axial regulator YABBY 5-like isoform X1
Refseq	XP_021760782.1	3e-89	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	2e-59	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0K9QZA0	2e-85	A0A0K9QZA0_SPIOL; Uncharacterized protein
STRING	XP_010687959.1	4e-88	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-62	YABBY family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019532-RA

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]