PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019533-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YB

Protein Properties

Length: 163aa MW: 18902.4 Da PI: 8.1699

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019533-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	135.5	1.6e-42	1	81	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mkk++P+ kiskdaketvq+cvsefisfvt ea+dkcq+ekrktingdd++wa++tlGfe+yv plk+yl+kyr++eg+k AHYPO_019533-RA 1 MKKIVPNTWKISKDAKETVQQCVSEFISFVTVEATDKCQKEKRKTINGDDIIWAITTLGFEEYVYPLKIYLNKYRDIEGDK 81 9******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-39	1	107	IPR009072	Histone-fold
Pfam	PF00808	2.6E-19	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.24E-30	1	103	IPR009072	Histone-fold
PRINTS	PR00615	3.5E-18	19	37	No hit	No description
PRINTS	PR00615	3.5E-18	38	56	No hit	No description
PRINTS	PR00615	3.5E-18	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKKIVPNTWK ISKDAKETVQ QCVSEFISFV TVEATDKCQK EKRKTINGDD IIWAITTLGF 60 EEYVYPLKIY LNKYRDIEGD KLNIPKKQVS IDDQQKQQKL IQYQEQPHDH FKKVDYQRLS 120 SYSNNLYSST NSMFLLPQVN IPLLEQSLSS STSRANSLQE ND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-33	1	76	18	93	NF-YB
4awl_B	2e-33	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-33	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021734845.1	7e-59	nuclear transcription factor Y subunit B-3-like
Swissprot	Q9SIT9	9e-46	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A2H5QG31	3e-51	A0A2H5QG31_CITUN; Uncharacterized protein
STRING	XP_010674594.1	1e-53	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-47	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	AHYPO_019533-RA

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]