PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019615-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 310aa    MW: 34598.7 Da    PI: 5.097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019615-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                     +g+W +eEd++l+d +++ G+g+W+t +++     gRt++++k++w+++
  AHYPO_019615-RA 14 KGPWLPEEDQKLIDFIQKNGPGNWRTLPKKAAklPGRTDNEIKNYWNTH 62
                     79***************************999999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22571IPR009057Homeodomain-like
SuperFamilySSF466893.37E-15973IPR009057Homeodomain-like
PROSITE profilePS5129421.941967IPR017930Myb domain
SMARTSM007172.5E-131365IPR001005SANT/Myb domain
PfamPF002493.1E-131462IPR001005SANT/Myb domain
CDDcd001674.22E-131663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKD GLKKGPWLPE EDQKLIDFIQ KNGPGNWRTL PKKAAKLPGR TDNEIKNYWN  60
THIRKRLLRM GIDPVTHTRR LDFLDLPSIL NNHSSILQNS NDNQLNLLKL LGLQSLVNPN  120
LLGLASLLSN NAQNQNILLQ NLQTNQFSNE NPCQIMQNPI QNTIPNCSPM IINPSNNTHN  180
FNDTQMVKSS LEDYPTRYTD SIAQNFVPQT DSMVNNHQES EKYEAILDSL LDTLGLNSAS  240
SELKMPSLLS TPCSSQQTPT PPLSASNSAA YQPNSSSTTS SEDEIDSYCQ NLLNFDVPVH  300
DIFDNYTLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719388.13e-98transcription factor MYB41-like
TrEMBLA0A2C9U8271e-62A0A2C9U827_MANES; Uncharacterized protein
STRINGXP_010686262.11e-94(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-41MYB-like 102