PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_019632-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 233aa MW: 26343.4 Da PI: 5.4726

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_019632-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	91	142	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +r h e Er RR+++ + f+ Lr+ lP + ++K s ++ +++A++YI++L AHYPO_019632-RA 91 KRILHREYERLRRQEMANLFNSLRQTLPVeL---IQGKRSISDDVREAINYIQDL 142 6889***********************78...*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.78E-6	88	147	No hit	No description
SuperFamily	SSF47459	9.81E-14	89	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.052	90	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-8	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-9	92	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0088	96	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MFPFQRSCEL SFKISDEGDQ NNEPTNLEDQ IMLENNLFLG FNNNISNVSI NPERGRGRGR 60 GRGRGRRSSS SLAGSSSSTN NTIANNDEVE KRILHREYER LRRQEMANLF NSLRQTLPVE 120 LIQGKRSISD DVREAINYIQ DLKKNVKELE EKRDELRKSV ESPSSSSGND GGLRDQSCVV 180 IRQSVVGLEI EISVGFEHQQ FLLSTALQII VDEGLEVVTC TSTKFNDKLL HIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	64	RGRGRGRGRG
2	55	65	RGRGRGRGRGR
3	90	102	KRILHREYERLRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693645.1	6e-78	PREDICTED: transcription factor bHLH118
TrEMBL	A0A0J8BC34	1e-76	A0A0J8BC34_BETVU; Uncharacterized protein
STRING	XP_010693645.1	2e-77	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	2e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_019632-RA